ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.
Identifieur interne : 000349 ( Main/Exploration ); précédent : 000348; suivant : 000350ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.
Auteurs : Abdelmajid Zouhir [Tunisie] ; Malek Taieb [Tunisie] ; Mohamed Ashraf Lamine [Tunisie] ; Ammar Cherif [Tunisie] ; Taoufik Jridi [Tunisie] ; Basma Mahjoubi [Tunisie] ; Sarra Mbarek [Tunisie] ; Ismail Fliss [Canada] ; Adel Nefzi [États-Unis] ; Khaled Sebei [Tunisie] ; Jeannette Ben Hamida [Tunisie]Source :
- Archives of microbiology [ 1432-072X ] ; 2017.
Descripteurs français
- KwdFr :
- Antibactériens (composition chimique), Antibactériens (pharmacologie), Bases de données pharmaceutiques (MeSH), Huile essentielle (pharmacologie), Peptides (composition chimique), Peptides (pharmacologie), Relation structure-activité (MeSH), Staphylococcus aureus (effets des médicaments et des substances chimiques), Staphylococcus aureus résistant à la méticilline (effets des médicaments et des substances chimiques).
- MESH :
- composition chimique : Antibactériens, Peptides.
- effets des médicaments et des substances chimiques : Staphylococcus aureus, Staphylococcus aureus résistant à la méticilline.
- pharmacologie : Antibactériens, Huile essentielle, Peptides.
- Bases de données pharmaceutiques, Relation structure-activité.
English descriptors
- KwdEn :
- Anti-Bacterial Agents (chemistry), Anti-Bacterial Agents (pharmacology), Databases, Pharmaceutical (MeSH), Methicillin-Resistant Staphylococcus aureus (drug effects), Oils, Volatile (pharmacology), Peptides (chemistry), Peptides (pharmacology), Staphylococcus aureus (drug effects), Structure-Activity Relationship (MeSH).
- MESH :
- chemical , chemistry : Anti-Bacterial Agents, Peptides.
- chemical , pharmacology : Anti-Bacterial Agents, Oils, Volatile, Peptides.
- drug effects : Methicillin-Resistant Staphylococcus aureus, Staphylococcus aureus.
- Databases, Pharmaceutical, Structure-Activity Relationship.
Abstract
Staphylococcus aureus and methicillin-resistant S. aureus are major pathogens. The antimicrobial peptides and essential oils (EOs) display narrow- or broad-spectrum activity against bacteria including these strains. A centralized resource, such as a database, designed specifically for anti-S. aureus/anti-methicillin-resistant S. aureus antimicrobial peptides and EOs is therefore needed to facilitate the comprehensive investigation of their structure/activity associations and combinations. The database ANTISTAPHYBASE is created to facilitate access to important information on antimicrobial peptides and essential peptides against methicillin-resistant S. aureus and S. aureus. At the moment, the database contains 596 sequences of antimicrobial peptides produced by diverse organisms and 287 essential oil records. It permits a quick and easy search of peptides based on their activity as well as their general, physicochemical properties and literature data. These data are very useful to perform further bioinformatic or chemometric analysis and would certainly be useful for the development of new drugs for medical use. The ANTISTAPHYBASE database is freely available at: https://www.antistaphybase.com/ .
DOI: 10.1007/s00203-016-1293-6
PubMed: 27671474
Affiliations:
- Canada, Tunisie, États-Unis
- Floride, Gouvernorat de Tunis, Québec
- Québec (ville), Tunis
- Université Laval
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000466
- to stream PubMed, to step Curation: 000465
- to stream PubMed, to step Checkpoint: 000453
- to stream Main, to step Merge: 000349
- to stream Main, to step Curation: 000349
Le document en format XML
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xml:lang="en">ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.</title><author><name sortKey="Zouhir, Abdelmajid" sort="Zouhir, Abdelmajid" uniqKey="Zouhir A" first="Abdelmajid" last="Zouhir">Abdelmajid Zouhir</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia. zouheirabdelmajid@yahoo.fr.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia. zouheirabdelmajid@yahoo.fr.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Taieb, Malek" sort="Taieb, Malek" uniqKey="Taieb M" first="Malek" last="Taieb">Malek Taieb</name><affiliation wicri:level="1"><nlm:affiliation>Faculty of Sciences of Gabes, University of gabes, Gabès, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Faculty of Sciences of Gabes, University of gabes, Gabès</wicri:regionArea><wicri:noRegion>Gabès</wicri:noRegion></affiliation></author><author><name sortKey="Lamine, Mohamed Ashraf" sort="Lamine, Mohamed Ashraf" uniqKey="Lamine M" first="Mohamed Ashraf" last="Lamine">Mohamed Ashraf Lamine</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Cherif, Ammar" sort="Cherif, Ammar" uniqKey="Cherif A" first="Ammar" last="Cherif">Ammar Cherif</name><affiliation wicri:level="3"><nlm:affiliation>Faculty of Sciences of Tunis, Université of El Manar , Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Faculty of Sciences of Tunis, Université of El Manar , Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Jridi, Taoufik" sort="Jridi, Taoufik" uniqKey="Jridi T" first="Taoufik" last="Jridi">Taoufik Jridi</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Mahjoubi, Basma" sort="Mahjoubi, Basma" uniqKey="Mahjoubi B" first="Basma" last="Mahjoubi">Basma Mahjoubi</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Mbarek, Sarra" sort="Mbarek, Sarra" uniqKey="Mbarek S" first="Sarra" last="Mbarek">Sarra Mbarek</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author><author><name sortKey="Fliss, Ismail" sort="Fliss, Ismail" uniqKey="Fliss I" first="Ismail" last="Fliss">Ismail Fliss</name><affiliation wicri:level="4"><nlm:affiliation>Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Quebec, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Quebec</wicri:regionArea><orgName type="university">Université Laval</orgName><placeName><settlement type="city">Québec (ville)</settlement><region type="state">Québec</region></placeName></affiliation></author><author><name sortKey="Nefzi, Adel" sort="Nefzi, Adel" uniqKey="Nefzi A" first="Adel" last="Nefzi">Adel Nefzi</name><affiliation wicri:level="2"><nlm:affiliation>Torrey Pines Institute for Molecular Studies, Port St. Lucie, FL, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Torrey Pines Institute for Molecular Studies, Port St. Lucie, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Sebei, Khaled" sort="Sebei, Khaled" uniqKey="Sebei K" first="Khaled" last="Sebei">Khaled Sebei</name><affiliation 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Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name><affiliation wicri:level="3"><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation><affiliation wicri:level="3"><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis</wicri:regionArea><placeName><settlement type="city">Tunis</settlement><region nuts="2">Gouvernorat de Tunis</region></placeName></affiliation></author></analytic><series><title level="j">Archives of microbiology</title><idno type="eISSN">1432-072X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Anti-Bacterial Agents (chemistry)</term><term>Anti-Bacterial Agents (pharmacology)</term><term>Databases, Pharmaceutical (MeSH)</term><term>Methicillin-Resistant Staphylococcus aureus (drug effects)</term><term>Oils, Volatile (pharmacology)</term><term>Peptides (chemistry)</term><term>Peptides (pharmacology)</term><term>Staphylococcus aureus (drug effects)</term><term>Structure-Activity Relationship (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Antibactériens (composition chimique)</term><term>Antibactériens (pharmacologie)</term><term>Bases de données pharmaceutiques (MeSH)</term><term>Huile essentielle (pharmacologie)</term><term>Peptides (composition chimique)</term><term>Peptides (pharmacologie)</term><term>Relation structure-activité (MeSH)</term><term>Staphylococcus aureus (effets des médicaments et des substances chimiques)</term><term>Staphylococcus aureus résistant à la méticilline (effets des médicaments et des substances chimiques)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Anti-Bacterial Agents</term><term>Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Anti-Bacterial Agents</term><term>Oils, Volatile</term><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Antibactériens</term><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Methicillin-Resistant Staphylococcus aureus</term><term>Staphylococcus aureus</term></keywords><keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Staphylococcus aureus</term><term>Staphylococcus aureus résistant à la méticilline</term></keywords><keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Antibactériens</term><term>Huile essentielle</term><term>Peptides</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Pharmaceutical</term><term>Structure-Activity Relationship</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données pharmaceutiques</term><term>Relation structure-activité</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Staphylococcus aureus and methicillin-resistant S. aureus are major pathogens. The antimicrobial peptides and essential oils (EOs) display narrow- or broad-spectrum activity against bacteria including these strains. A centralized resource, such as a database, designed specifically for anti-S. aureus/anti-methicillin-resistant S. aureus antimicrobial peptides and EOs is therefore needed to facilitate the comprehensive investigation of their structure/activity associations and combinations. The database ANTISTAPHYBASE is created to facilitate access to important information on antimicrobial peptides and essential peptides against methicillin-resistant S. aureus and S. aureus. At the moment, the database contains 596 sequences of antimicrobial peptides produced by diverse organisms and 287 essential oil records. It permits a quick and easy search of peptides based on their activity as well as their general, physicochemical properties and literature data. These data are very useful to perform further bioinformatic or chemometric analysis and would certainly be useful for the development of new drugs for medical use. The ANTISTAPHYBASE database is freely available at: https://www.antistaphybase.com/ .</div></front></TEI><affiliations><list><country><li>Canada</li><li>Tunisie</li><li>États-Unis</li></country><region><li>Floride</li><li>Gouvernorat de Tunis</li><li>Québec</li></region><settlement><li>Québec (ville)</li><li>Tunis</li></settlement><orgName><li>Université Laval</li></orgName></list><tree><country name="Tunisie"><region name="Gouvernorat de Tunis"><name sortKey="Zouhir, Abdelmajid" sort="Zouhir, Abdelmajid" uniqKey="Zouhir A" first="Abdelmajid" last="Zouhir">Abdelmajid Zouhir</name></region><name sortKey="Ben Hamida, Jeannette" sort="Ben Hamida, Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name><name sortKey="Ben Hamida, Jeannette" sort="Ben Hamida, Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name><name sortKey="Cherif, Ammar" sort="Cherif, Ammar" uniqKey="Cherif A" first="Ammar" last="Cherif">Ammar Cherif</name><name sortKey="Jridi, Taoufik" sort="Jridi, Taoufik" uniqKey="Jridi T" first="Taoufik" last="Jridi">Taoufik Jridi</name><name sortKey="Jridi, Taoufik" sort="Jridi, Taoufik" uniqKey="Jridi T" first="Taoufik" last="Jridi">Taoufik Jridi</name><name sortKey="Lamine, Mohamed Ashraf" sort="Lamine, Mohamed Ashraf" uniqKey="Lamine M" first="Mohamed Ashraf" last="Lamine">Mohamed Ashraf Lamine</name><name sortKey="Lamine, Mohamed Ashraf" sort="Lamine, Mohamed Ashraf" uniqKey="Lamine M" first="Mohamed Ashraf" last="Lamine">Mohamed Ashraf Lamine</name><name sortKey="Mahjoubi, Basma" sort="Mahjoubi, Basma" uniqKey="Mahjoubi B" first="Basma" last="Mahjoubi">Basma Mahjoubi</name><name sortKey="Mahjoubi, Basma" sort="Mahjoubi, Basma" uniqKey="Mahjoubi B" first="Basma" last="Mahjoubi">Basma Mahjoubi</name><name sortKey="Mbarek, Sarra" sort="Mbarek, Sarra" uniqKey="Mbarek S" first="Sarra" last="Mbarek">Sarra Mbarek</name><name sortKey="Mbarek, Sarra" sort="Mbarek, Sarra" uniqKey="Mbarek S" first="Sarra" last="Mbarek">Sarra Mbarek</name><name sortKey="Sebei, Khaled" sort="Sebei, Khaled" uniqKey="Sebei K" first="Khaled" last="Sebei">Khaled Sebei</name><name sortKey="Sebei, Khaled" sort="Sebei, Khaled" uniqKey="Sebei K" first="Khaled" last="Sebei">Khaled Sebei</name><name sortKey="Taieb, Malek" sort="Taieb, Malek" uniqKey="Taieb M" first="Malek" last="Taieb">Malek Taieb</name><name sortKey="Zouhir, Abdelmajid" sort="Zouhir, Abdelmajid" uniqKey="Zouhir A" first="Abdelmajid" last="Zouhir">Abdelmajid Zouhir</name></country><country name="Canada"><region name="Québec"><name sortKey="Fliss, Ismail" sort="Fliss, Ismail" uniqKey="Fliss I" first="Ismail" last="Fliss">Ismail Fliss</name></region></country><country name="États-Unis"><region name="Floride"><name sortKey="Nefzi, Adel" sort="Nefzi, Adel" uniqKey="Nefzi A" first="Adel" last="Nefzi">Adel Nefzi</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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